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A language for scientific graphics, provided at http://gri.sourceforge.net. More than 10,000 copies of Gri have been downloaded from the SourceForge site alone, and it is incorporated in the Debian GNU/linux system.
An error-propagating calculator, provided at http://epc.sourceforge.net. Based on Perl, Epc has been superseded by the capabilities of Maple, but of course the latter is not open-source.
Oce is a library for Oceanographic analysis in the R statistical language. Although it is in an early phase of development, it is already quite useful in working with several types of oceanographic data, especially CTD data.
Projectplanning is an R package for project planning.
I hacked perl2html to handle R code, yielding R2html, still in development and not yet announced.