Michael W. Gray | publications (from 2005)

 

1.                Gawryluk, R. M. R. and Gray, M. W. (2009) A split and rearranged nuclear gene encoding the iron-sulfur subunit of mitochondrial succinate dehydrogenase in Euglenozoa BMC Res. Notes 2:16 [PubMed]

2.                 Watkins, R. F. and Gray, M. W. (2008) Sampling gene diversity across the supergroup Amoebozoa: large EST data sets from Acanthamoeba castellanii, Hartmannella vermiformis, Physarum polycephalum, Hyperamoeba dachnaya and Hyperamoeba sp. Protist 159:269-281 [PubMed]

3.                Lin, S., Zhang, H. and Gray, M.W. (2008) RNA editing in dinoflagellates and its implications for the evolutionary history of the editing machinery. In RNA and DNA Editing: Molecular Mechanisms and Their Integration into Biological Systems (Smith, H.C., ed.) Wiley Press:280-309

4.                Ruiz-Trillo, I., Roger, A. J., Burger, G., Gray, M. W. and Lang, B. F. (2008) A phylogenomic investigation into the origin of Metazoa. Mol. Biol. Evol. 25:664-672 [PubMed]

5.                O'Brien, E.A., Koski, L.B., Zhang, Y., Yang, L., Wang, E., Gray, M.W., Burger, G. and Lang, B.F. (2007) TBestDB: a taxonomically broad database of expressed sequence tags (ESTs). Nucleic Acids Res. 35:D445-D451 [PubMed]

6.                Ruiz-Trillo, I., Burger, G., Holland, P.W.H., King, N., Lang, B.F., Roger, A.J. and Gray, M.W. (2007) The origins of multicellularity: a multi-taxon genome initiative. Trends Genet. 23:113-118 [PubMed]

7.                Lohan, A.J. and Gray, M.W. (2007) Analysis of 5'- or 3'-terminal tRNA editing: mitochondrial 5' editing in Acanthamoeba castellanii as the exemplar. Methods Enzymol. 424: 221-242 [PubMed]

8.                Rogers, M.B., Watkins, R.F., Harper, J.T., Durnford, D.G., Gray, M.W. and Keeling, P.J. (2007) A complex and punctate distribution of three eukaryotic genes derived by lateral gene transfer. BMC Evol. Biol. 7: 89 [PubMed]

9.                Rodríguez-Ezpeleta, N., Brinkmann, H., Burger, G., Roger, A. J., Gray, M.W., Philippe, H. and Lang, B.F. (2007) Towards resolving the eukaryotic tree: the phylogenetic positions of jakobiods and cercozoans. Curr. Biol. 17:1420-1425 [PubMed]

10.           Jackson, C. J., Norman, J. E., Schnare, M. N., Gray, M. W., Keeling, P. J. and Waller, R. F. (2007) Broad genomic and transcriptional analysis reveals a highly derived genome in dinoflagellate mitochondria. BMC Biol. 5: 41 [PubMed]

11.           Smith, D. G. S., Gawryluk, R. M. R., Spencer, D. F., Pearlman, R. E., Siu, K. W. M. and Gray, M. W. (2007) Exploring the mitochondrial proteome of the ciliate protozoon, Tetrahymena thermophila: direct analysis by tandem mass spectrometry. J. Mol. Biol. 374: 837-863 [PubMed]

12.           Shutt, T.E. and Gray, M.W. (2006) Twinkle, the mitochondrial replicative DNA helicase, is widespread in the eukaryotic radiation and may also be the mitochondrial DNA primase in most eukaryotes J. Mol. Evol. 62:588-599 [PubMed]

13.           Durnford, D.G. and Gray, M.W. (2006) Analysis of Euglena gracilis plastid-targeted proteins reveals different classes of transit sequences. Eukaryot. Cell 5:2079-2091 [PubMed]

14.           Shutt, T.E. and Gray, M.W. (2006) Bacteriophage origins of mitochondrial replication and transcription proteins. Trends Genet. 22:90-95 [PubMed]

15.           Russell, A.G., Schnare, M.N. and Gray, M.W. (2006) A large collection of compact box C/D snoRNAs and their isoforms in Euglena gracilis: structural, functional and evolutionary insights. J. Mol. Biol. 357: 1548-1565 [PubMed]

16.           Shutt, T.E. and Gray, M.W. (2006) Homologs of mitochondrial transcription factor B, sparsely distributed within the eukaryotic radiation, are likely derived from the dimethyladenosine methyltransferase of the mitochondrial endosymbiont. Mol. Biol. Evol. 23:1169-1179 [PubMed]

17.           Watkins, R.F. and Gray, M.W. (2006) The frequency of eubacterium-to-eukaryote lateral gene transfers shows significant cross-taxa variation in the phylum Amoebozoa J. Mol. Evol. 63:801-814 [PubMed]

18.           Russell, A.G., Charette, J.M., Spencer, D.F. and Gray, M.W. (2006) An early evolutionary origin for the minor spliceosome. Nature 443:863-866 [PubMed]

19.           Bullerwell, C.E. and Gray, M.W. (2005) In vitro characterization of a tRNA editing activity in the mitochondria of Spizellomyces punctatus, a chytridiomycete fungus. J. Biol. Chem. 280:2463-2470 [PubMed]

20.           Gray, M.W. (2005) Contemporary issues in mitochondrial origins and evolution. Microbial Phylogeny and Evolution (J. Sapp, ed.) Oxford University Press, New York:224-237

21.           Gray, M. W. (2005) The hydrogenosome's murky past. Nature 434:29-31 [PubMed]

22.           Anderson, I.J., Watkins, R.F., Samuelson, J., Spencer, D.F., Majoros, W.H., Gray, M.W. and Loftus, B.J. (2005) Gene discovery in the Acanthamoeba castellanii genome. Protist 156:203-214 [PubMed]

23.           Russell, A.G., Watanabe, Y-i., Charette, J.M. and Gray, M.W. (2005) Unusual features of fibrillarin cDNA and gene structure in Euglena gracilis: evolutionary conservation of core proteins in methylation-guide box C/D snoRNPs throughout the domain Eucarya. Nucleic Acids Res. 33:2781-2791 [PubMed]

24.           Koski, L.B., Gray, M.W., Lang, B.F. and Burger, G. (2005) AutoFACT: an Automatic Functional Annotation and Classification Tool. BMC Bioinfomatics 6:151 [PubMed]

25.           Keeling, P.J., Burger, G., Durnford, D.G., Lang, B.F., Lee, R.W., Pearlman, R.E., Roger, A. J. and Gray, M.W. (2005) The tree of eukaryotes. Trends Ecol. Evol. 20: 670-676 [PubMed]

26.           Russell, A.G., Shutt, T.E., Watkins, R.F. and Gray, M.W. (2005) An ancient spliceosomal intron in the ribosomal protein L7a gene (Rpl7a) of Giardia lamblia. BMC Evol. Biol. 5:45 [PubMed]

 

Revised:  February 2009